![]() I had same issue too but fixed by clearing “Cookies and saved website data” from settings (not F12). I found the following Microsoft Support Article where users were experiencing similar behavior and noted that F12 to clear cache was not working and they had to take a couple extra steps: Xx_56| 32575|| 2.23 TiB| 10.Since this is isolated to only a few users but not reproducible by you on the same browse, its sounding like a possible caching issue. I am using scratch2 and project directory which have plenty of space. You mean something like this typing quota does not give any output. ![]() Import('pkg_resources').run_script('MACS2=2.2.7.1', 'macs2')įile "/project/xxx_71/xxx/xx1/software/python_package/pkg_resources/ init.py", line 650, in run_script project/xxx_71/xxx/xx1/broad/A1.F1_peaks.xlsįile "/project/xxx_71/xxx/xx1/software/MACS-master/bin/macs2", line 4, in INFO Wed, 00:42:19: #4 Write output xls file. INFO Wed, 00:26:01: #3 Call peaks for each chromosome. INFO Wed, 00:26:01: #3 Write bedGraph files for control lambda (after scaling if necessary). ![]() INFO Wed, 00:26:01: #3 Write bedGraph files for treatment pileup (after scaling if necessary). INFO Wed, 00:26:01: #3 In the peak calling step, the following will be performed simultaneously: INFO Wed, 00:10:46: #3 Pre-compute pvalue-qvalue table. INFO Wed, 00:10:46: #1 Redundant rate of control: 0.09 INFO Wed, 00:10:46: #1 fragments after filtering in control: 115046583 INFO Wed, 00:05:58: #1 filter out redundant fragments by allowing at most 1 identical fragment(s) INFO Wed, 00:05:58: #1 user defined the maximum fragments. INFO Wed, 00:05:58: #1 Redundant rate of treatment: 0.29 INFO Wed, 00:05:58: #1 fragments after filtering in treatment: 67559775 INFO Wed, 00:02:31: #1 filter out redundant fragments by allowing at most 1 identical fragment(s) INFO Wed, 00:02:31: #1 user defined the maximum fragments. INFO Wed, 00:02:31: #1 note: mean fragment size in control is 247.8 bp - value ignored INFO Wed, 00:02:31: #1 mean fragment size is determined as 285.8 bp from treatment ![]() INFO Tue, 23:42:29: #1 read treatment fragments. INFO Tue, 23:42:29: #1 read fragment files. Range for calculating regional lambda is: 1000 bps and 10000 bps Larger dataset will be scaled towards smaller dataset. The minimum length of peaks is assigned as the predicted fragment length "d". The maximum gap between significant sites is assigned as the read length/tag size. Qvalue cutoff for broad/weak regions = 1.00e-01 Qvalue cutoff for narrow/strong regions = 1.00e-02 The same command works when I did not have -broadĬommand line: callpeak -broad -tempdir /scratch/xxx/ -t /project/xxx_71/xxx/xx1/A1.clean_sorted.bam -c /project/xxx_71/xxx/xx1/F1.clean_sorted.bam -f BAMPE -g hs -outdir /project/xxx_71/xxx/xx1/broad -n A1.F1 -B -q 0.01ĬhIP-seq file = Ĭontrol file = Can anyone help what the issue is ? Thanks. I am receiving the following error message.
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